C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419395 SPATA18-002 ENSG00000163071 9606 + 4:52051416-52095893 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENST00000419395
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000419395 0.082±0.00 0.521±0.00 0.114±0.04 0.567±0.00 0.351±0.00 0.262±0.00 2.467±0.00 0.120±0.03 0.359±0.00 7.755±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CP CIL_0001CP_0001 CGP 4:52020706-52097292
CIL_0001CQ CIL_0001CQ_0001 CGP 4:52051331-52659335

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005741 IDA mitochondrial outer membrane
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0035694 IMP mitochondrial protein catabolic process
GO:0035695 IMP mitochondrion degradation by induced vacuole formation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071077 Spata18-202 protein_coding Mus_musculus 0 784
ENSMUST00000113548 Spata18-203 protein_coding Mus_musculus 0 771
ENSMUST00000041422 Spata18-201 protein_coding Mus_musculus 0 758
ENSMUST00000178631 Spata18-204 protein_coding Mus_musculus 0 715

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