C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419491 RPL17P17-001 ENSG00000223409 9606 + 3:65843890-65844446 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000419491
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000419491 0.024±0.00 0.630±0.00 0.096±0.00 2.336±2.10 1.263±1.24 0.021±0.00 0.235±0.00 0.145±0.00 2.559±0.00 0.657±0.60 0.085±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H8 CIL_0008H8_0001 VISTA 3:65304306-65905890
CIL_00034P CIL_00034P_0001 CGP 3:65353525-66388116

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 484
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 479
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 322

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