C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 1 (soluble) pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419974 SHMT1P1-001 ENSG00000224751 9606 - 1:43850300-43851611 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryTestisENST00000419974
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000419974 0.098±0.00 0.083±0.00 0.067±0.05 0.143±0.13 0.095±0.00 0.043±0.00 0.039±0.00 0.299±0.00 0.141±0.16 0.051±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B8 CIL_0005B8_0002 CGP 1:43650158-43931165
CIL_0005B9 CIL_0005B9_0002 CGP 1:43705824-43937241
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018744 Shmt1-001 protein_coding Mus_musculus 0 1140
ENSMUST00000174214 Shmt1-010 protein_coding Mus_musculus 0 983
ENSMUST00000174174 Shmt1-007 nonsense_mediated_decay Mus_musculus 0 937
ENSMUST00000174093 Shmt1-005 processed_transcript Mus_musculus 0 750
ENSMUST00000173260 Shmt1-004 retained_intron Mus_musculus 0 645
ENSMUST00000174719 Shmt1-006 protein_coding Mus_musculus 0 645
ENSDART00000074737 shmt1-001 protein_coding Danio_rerio 0 363
ENSDART00000141578 shmt1-003 protein_coding Danio_rerio 0 303
ENSMUST00000173698 Shmt1-008 processed_transcript Mus_musculus 0 292
ENSDART00000132225 shmt1-002 protein_coding Danio_rerio 0 287

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