C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420808 NISCH-014 ENSG00000010322 9606 + 3:52455617-52481914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420808
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420808 5.875±0.00 6.593±0.00 5.429±0.00 1.674±0.09 2.964±2.38 2.055±0.00 4.157±0.28 1.762±0.21 3.038±0.26 4.592±0.78 11.399±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006915 IEA apoptotic process
GO:0016020 IDA membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172142 Nisch-001 protein_coding Mus_musculus 0 1825
ENSMUST00000022469 Nisch-004 protein_coding Mus_musculus 0 1546
ENSMUST00000165981 Nisch-002 protein_coding Mus_musculus 0 1321
ENSMUST00000168206 Nisch-005 protein_coding Mus_musculus 0 1140
ENSMUST00000164989 Nisch-006 nonsense_mediated_decay Mus_musculus 0 1040
ENSMUST00000169149 Nisch-021 nonsense_mediated_decay Mus_musculus 0 612
ENSMUST00000168451 Nisch-020 protein_coding Mus_musculus 0 597
ENSMUST00000172370 Nisch-011 retained_intron Mus_musculus 0 381
ENSMUST00000164000 Nisch-023 processed_transcript Mus_musculus 0 261
ENSMUST00000170343 Nisch-010 protein_coding Mus_musculus 0 246

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