C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420826 SUMO2-001 ENSG00000188612 9606 - 17:75165586-75182983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420826 5.373±0.00 8.024±0.00 5.550±0.00 8.142±0.42 5.550±0.71 6.659±3.33 3.322±0.00 7.663±0.77 6.097±2.00 11.617±4.91 4.280±1.79 20.148±12.25 12.814±0.00 15.347±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0001JI CIL_0001JI_0001 CGP 17:75130225-75168281
CIL_0001HE CIL_0001HE_0001 CGP 17:75135248-75182983
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0016605 IDA PML body
GO:0016925 IEA:IDA protein sumoylation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 1404
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 1341
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 1190
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 1182
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 850
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 460
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000122370 Smt3h2-ps2-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 401
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 390
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 357
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000120621 Gm12721-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 322
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.000001 60

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