C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | PAX3 and PAX7 binding protein 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000421049  |
PAXBP1-008 |
ENSG00000159086 |
9606 | - |
21:32748559-32755311  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008TI | CIL_0008TI_0001 | VISTA | 21:32549146-33151638 |
| CIL_00087M | CIL_00087M_0001 | VISTA | 21:32616647-33220574 |
| CIL_0009BQ | CIL_0009BQ_0001 | VISTA | 21:32618474-33219807 |
| CIL_000089 | CIL_000089_0001 | CGP | 21:32628759-32771858 |
| CIL_0003TV | CIL_0003TV_0001 | CGP | 21:32733899-32813743 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | IEA | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | IEA | nucleus |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000145136
|
Paxbp1-008 | nonsense_mediated_decay | Mus_musculus | 0 | 505 |
|
ENSMUST00000146281
|
Paxbp1-003 | retained_intron | Mus_musculus | 0 | 324 |
|
ENSMUST00000023698
|
Paxbp1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 324 |
|
ENSMUST00000118522
|
Paxbp1-001 | protein_coding | Mus_musculus | 0 | 219 |
|
ENSMUST00000124653
|
Paxbp1-004 | retained_intron | Mus_musculus | 2e-26 | 122 |
