C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421462 PKP4-005 ENSG00000144283 9606 + 2:158457455-158663003 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverOvaryENST00000421462
Transcript ID Bladder Heart Liver Ovary
ENST00000421462 5.896±0.00 1.524±0.00 2.457±0.00 3.759±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016337 IEA single organismal cell-cell adhesion
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032467 IEA positive regulation of cytokinesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 3057
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 2837
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 2189
ENSMUST00000184332 Pkp4-005 nonsense_mediated_decay Mus_musculus 0 2189
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 2189
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 1192
ENSMUST00000123908 Pkp4-002 protein_coding Mus_musculus 0 1192
ENSMUST00000124725 Pkp4-011 processed_transcript Mus_musculus 0 688
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 545
ENSMUST00000183625 Pkp4-006 processed_transcript Mus_musculus 0 407
ENSMUST00000184705 Pkp4-007 nonsense_mediated_decay Mus_musculus 0 329
ENSMUST00000122888 Pkp4-008 processed_transcript Mus_musculus 0 287
ENSMUST00000126749 Pkp4-009 processed_transcript Mus_musculus 0 213

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