C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422360 RPL17P43-001 ENSG00000228331 9606 + 17:19496943-19497528 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000422360
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000422360 0.022±0.00 0.202±0.00 0.023±0.00 0.926±0.88 0.041±0.00 0.020±0.00 0.260±0.24 0.020±0.00 0.101±0.07 0.050±0.00 2.321±1.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 442
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 431
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 287
ENSMUST00000120724 Gm12607-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 0.00000000003 73

Loading