C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCHC-type zinc finger, nucleic acid binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422453 CNBP-001 ENSG00000169714 9606 - 3:129169484-129183922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000422453
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000422453 7.922±0.00 18.242±0.00 18.046±1.78 16.628±0.00 20.419±0.00 32.047±0.00 36.689±0.00 19.481±0.00 67.115±0.00 41.161±22.99 29.736±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007J CIL_00007J_0002 CGP 3:129127415-129183922
CIL_000312 CIL_000312_0001 CGP 3:129169484-129277773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005783 ISS endoplasmic reticulum
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006695 TAS cholesterol biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0008284 ISS positive regulation of cell proliferation
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113619 Cnbp-001 protein_coding Mus_musculus 0 2375
ENSMUST00000032138 Cnbp-201 protein_coding Mus_musculus 0 2368
ENSMUST00000141961 Cnbp-004 retained_intron Mus_musculus 0 726
ENSMUST00000113617 Cnbp-002 protein_coding Mus_musculus 0 649
ENSMUST00000134851 Cnbp-003 retained_intron Mus_musculus 0 593
ENSDART00000104520 cnbpb-001 protein_coding Danio_rerio 0 514
ENSDART00000154888 cnbpb-002 protein_coding Danio_rerio 0 331

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