C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: murine retrovirus integration site 1 homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423302 MRVI1-001 ENSG00000072952 9606 - 11:10573095-10693752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungOvaryPlacentaTestisENST00000423302
Transcript ID Brain Liver Lung Ovary Placenta Testis
ENST00000423302 2.897±1.64 4.713±0.00 2.226±0.00 4.889±1.38 2.508±0.00 5.949±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J9 CIL_0004J9_0001 CGP 11:10511678-10611689
CIL_0004IK CIL_0004IK_0001 CGP 11:10556966-10693988
CIL_0004JB CIL_0004JB_0001 CGP 11:10573091-10779743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007596 TAS blood coagulation
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0019934 IEA cGMP-mediated signaling
GO:0031095 TAS platelet dense tubular network membrane
GO:0045986 IEA negative regulation of smooth muscle contraction
GO:0060087 IEA relaxation of vascular smooth muscle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125758 Mrvi1-002 protein_coding Mus_musculus 0 2543
ENSMUST00000005751 Mrvi1-001 protein_coding Mus_musculus 0 2543
ENSMUST00000127935 Mrvi1-004 protein_coding Mus_musculus 0 1986
ENSMUST00000142368 Mrvi1-003 protein_coding Mus_musculus 0 736
ENSMUST00000154466 Mrvi1-005 protein_coding Mus_musculus 0 623
ENSMUST00000135590 Mrvi1-006 retained_intron Mus_musculus 0 257

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