C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423357 RPL7AP25-001 ENSG00000235294 9606 - 3:181505075-181505879 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungTestisENST00000423357
Transcript ID Brain Breast Lung Testis
ENST00000423357 0.083±0.00 0.058±0.00 0.163±0.00 0.319±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 501
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 484
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 468
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 272
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 0 219
ENSMUST00000118749 Gm4909-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 2.00386e-43 180
ENSMUST00000147143 Rpl7a-007 processed_transcript Mus_musculus 9.99967e-42 174
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 9.99967e-42 174
ENSMUST00000149339 Rpl7a-006 processed_transcript Mus_musculus 8e-28 128

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