C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424879 RP4-580O19.2-001 ENSG00000235907 9606 - 1:33512008-33512743 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyOvaryTestisENST00000424879
Transcript ID Adipose Adrenal Brain Heart Kidney Ovary Testis
ENST00000424879 0.015±0.00 0.101±0.00 0.143±0.00 0.068±0.00 0.070±0.00 0.060±0.03 0.098±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160027 Psma3-001 protein_coding Mus_musculus 0 651
ENSMUST00000071704 Psma3-005 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000118459 Gm13835-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000160864 Psma3-007 protein_coding Mus_musculus 0 553
ENSMUST00000162626 Psma3-002 nonsense_mediated_decay Mus_musculus 0 551
ENSMUST00000160683 Psma3-004 retained_intron Mus_musculus 0 359
ENSMUST00000162851 Psma3-008 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000162898 Psma3-009 protein_coding Mus_musculus 0.000000000003 77

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