C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO1/sentrin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424947 SENP6-007 ENSG00000112701 9606 + 6:75633704-75679867 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLungOvaryPlacentaENST00000424947
Transcript ID Adipose Brain Colon Kidney Lung Ovary Placenta
ENST00000424947 2.222±0.00 3.803±0.80 3.582±0.00 2.703±0.00 2.004±0.00 2.825±0.00 1.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PT CIL_0006PT_0001 CGP 6:75291859-75718278
CIL_0006PS CIL_0006PS_0001 CGP 6:75601509-75919537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176607 Senp6-004 protein_coding Mus_musculus 0 1306
ENSMUST00000165607 Senp6-006 protein_coding Mus_musculus 0 1306
ENSMUST00000175999 Senp6-007 nonsense_mediated_decay Mus_musculus 0 1306
ENSMUST00000164859 Senp6-002 protein_coding Mus_musculus 0 1306
ENSMUST00000037484 Senp6-001 protein_coding Mus_musculus 0 1306
ENSMUST00000176527 Senp6-014 protein_coding Mus_musculus 0 464
ENSMUST00000176360 Senp6-005 protein_coding Mus_musculus 0 418
ENSMUST00000176640 Senp6-009 protein_coding Mus_musculus 0 283
ENSMUST00000175910 Senp6-015 processed_transcript Mus_musculus 0 228

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