C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426339 NPM1P26-001 ENSG00000235677 9606 + 10:96560185-96560922 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000426339
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000426339 0.043±0.00 0.091±0.00 0.220±0.00 3.076±0.00 0.162±0.00 0.594±0.00 0.579±0.54 0.181±0.00 0.188±0.00 0.612±0.73 0.059±0.04 0.053±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003D1 CIL_0003D1_0001 CGP 10:96364606-96587452
CIL_0005HG CIL_0005HG_0001 CGP 10:96518109-96720514

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 717
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 713
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 712
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 664
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 560
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 230
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 601

Loading