C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4X pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427198 RPS4XP16-001 ENSG00000224892 9606 + 13:51460525-51461315 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DO CIL_0002DO_0001 CGP 13:51335773-51454264
CIL_0002J2 CIL_0002J2_0001 CGP 13:51354077-51767707

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033683 Rps4x-001 protein_coding Mus_musculus 0 902
ENSMUST00000165198 Gm9294-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000119790 Gm13680-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000183728 Gm15013-002 protein_coding Mus_musculus 0 811
ENSMUST00000183537 Gm15013-001 translated_processed_pseudogene Mus_musculus 0 811
ENSMUST00000119478 Gm12852-001 processed_pseudogene Mus_musculus 0 569
ENSDART00000128917 rps4x-001 protein_coding Danio_rerio 0 560
ENSMUST00000187360 RP24-279G1.1-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119465 Gm12757-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000155028 Rps4x-003 retained_intron Mus_musculus 0 472
ENSDART00000007957 rps4x-003 retained_intron Danio_rerio 0 333
ENSMUST00000152739 Rps4x-002 retained_intron Mus_musculus 0 189
ENSMUST00000118165 Gm14020-001 processed_pseudogene Mus_musculus 8e-33 145

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