C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427253 AC009362.2-001 ENSG00000233287 9606 + 7:131242590-131242995 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000427253
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000427253 0.146±0.00 0.077±0.00 0.290±0.21 0.117±0.00 0.179±0.00 0.137±0.00 0.345±0.00 0.034±0.00 0.073±0.00 0.033±0.00 0.061±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002GU CIL_0002GU_0001 CGP 7:130731235-131496636
CIL_00024O CIL_00024O_0002 CGP 7:131110096-131558217

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088784 Rpl27-ps1-201 processed_pseudogene Mus_musculus 0 448
ENSMUST00000118048 Gm11518-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000107249 Rpl27-002 protein_coding Mus_musculus 0 448
ENSMUST00000077856 Rpl27-001 protein_coding Mus_musculus 0 448
ENSMUST00000097682 Rpl27-ps3-201 protein_coding Mus_musculus 0 448
ENSMUST00000119683 Gm6341-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000121828 Gm15730-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120378 Rpl27-ps2-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000117470 Gm15779-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000079690 Gm4825-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000120819 Gm12516-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000187540 RP23-380A10.4-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000139939 Rpl27-003 processed_transcript Mus_musculus 0 296
ENSMUST00000119016 Gm11699-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000152162 Rpl27-005 processed_transcript Mus_musculus 1e-37 159
ENSMUST00000127514 Rpl27-004 protein_coding Mus_musculus 1e-37 159

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