C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427761 NPM1P22-001 ENSG00000227969 9606 - 13:67831876-67832827 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000427761
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000427761 0.037±0.00 0.013±0.00 0.025±0.00 0.064±0.00 0.024±0.00 0.012±0.00 0.038±0.00 0.080±0.00 0.014±0.00 0.176±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S9 CIL_0008S9_0001 VISTA 13:67554985-68156394

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 929
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 785
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 778
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 776
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 575
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 230

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