C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide C, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428025 POLR1C-009 ENSG00000171453 9606 + 6:43509702-43520310 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000428025
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000428025 6.131±0.00 7.305±0.00 7.970±0.00 1.544±0.00 4.505±0.00 1.253±0.00 1.100±0.00 24.051±14.21 11.975±0.00 36.418±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0006351 IEA transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152583 Polr1c-003 retained_intron Mus_musculus 0 488
ENSMUST00000087026 Polr1c-001 protein_coding Mus_musculus 0 486
ENSMUST00000174392 Polr1c-006 retained_intron Mus_musculus 0 348
ENSMUST00000173232 Polr1c-007 nonsense_mediated_decay Mus_musculus 0 254
ENSMUST00000142706 Polr1c-004 protein_coding Mus_musculus 0 207
ENSMUST00000095262 Lrrc73-201 protein_coding Mus_musculus 1e-39 167

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