C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429017 HOXD8-002 ENSG00000175879 9606 + 2:176129694-176132695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429017
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429017 4.822±0.00 1.438±0.00 4.061±0.00 4.149±1.91 1.296±0.12 0.141±0.00 23.980±0.00 0.440±0.43 0.186±0.00 0.689±0.13 3.414±2.77 0.319±0.06 7.197±3.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017L CIL_00017L_0001 CGP 2:176122720-176132695
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019749 Hoxd8-001 protein_coding Mus_musculus 0 1107
ENSMUST00000074721 Hoxd8-002 protein_coding Mus_musculus 0 1031
ENSMUST00000151380 Hoxd8-003 protein_coding Mus_musculus 0 606
ENSDART00000046638 hoxb8a-001 protein_coding Danio_rerio 8e-16 90
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0.000000000006 77

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