C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, V (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429037 HLA-V-001 ENSG00000181126 9606 + 6:29792234-29793136 transcribed_unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonENST00000429037
Transcript ID Adipose Breast Colon
ENST00000429037 0.817±0.00 18.253±0.00 10.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0003 CGP 6:29722775-29831125

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 316
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 250
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 0 239
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 0 239
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 1.4013e-45 187

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