C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429294 HLA-F-006 ENSG00000204642 9606 + 6:29724039-29726526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429294
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429294 31.399±0.00 74.507±0.00 7.671±0.00 11.915±3.47 14.930±5.23 21.053±0.00 17.944±7.94 5.734±0.54 37.058±28.73 3.151±0.65 18.237±7.40 12.308±7.21 20.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0003 CGP 6:29722775-29831125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0019882 IEA antigen processing and presentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 435
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 422
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 422
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 422
ENSMUST00000173625 Gm8909-004 processed_transcript Mus_musculus 0 420
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 0 416
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 0 416
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 0 416
ENSMUST00000173975 H2-Q4-002 retained_intron Mus_musculus 0 412
ENSMUST00000081435 H2-Q4-001 protein_coding Mus_musculus 0 412
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 0 401
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 399
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 0 396
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 0 396
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 0 396
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 396
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 0 394
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 390
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 0 390
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 390
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 0 390
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 0 385
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 0 385
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 0 385
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 0 383
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 379
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 372
ENSMUST00000068291 H2-Q10-201 protein_coding Mus_musculus 0 366
ENSMUST00000174525 H2-Q10-001 protein_coding Mus_musculus 0 366
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 355
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 355
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 0 348
ENSMUST00000176712 H2-M5-002 protein_coding Mus_musculus 0 340
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 337
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 337
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 337
ENSMUST00000176784 H2-M5-005 protein_coding Mus_musculus 0 337
ENSMUST00000169189 H2-M5-001 protein_coding Mus_musculus 0 337
ENSMUST00000145260 H2-M5-003 retained_intron Mus_musculus 0 337
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 331
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 331
ENSMUST00000046131 Gm7030-201 protein_coding Mus_musculus 0 331
ENSMUST00000173322 Gm7030-001 protein_coding Mus_musculus 0 331
ENSMUST00000174325 H2-D1-005 retained_intron Mus_musculus 0 326
ENSMUST00000172968 Gm7030-202 protein_coding Mus_musculus 0 326
ENSMUST00000174693 Gm8909-003 processed_transcript Mus_musculus 0 322
ENSMUST00000087189 H2-K1-005 protein_coding Mus_musculus 0 322
ENSMUST00000173317 H2-K1-009 retained_intron Mus_musculus 0 320
ENSMUST00000173602 H2-K1-004 retained_intron Mus_musculus 0 320
ENSMUST00000184850 H2-Bl-006 retained_intron Mus_musculus 0 315
ENSMUST00000185167 H2-Bl-002 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 0 311
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 0 311
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 0 311
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 302
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 302
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 302
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 302
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 0 302
ENSMUST00000173016 H2-Q7-002 retained_intron Mus_musculus 0 294
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 0 294
ENSMUST00000173809 Gm8815-001 unprocessed_pseudogene Mus_musculus 0 291
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000174589 H2-Q10-002 retained_intron Mus_musculus 0 285
ENSMUST00000174345 Gm17782-001 unprocessed_pseudogene Mus_musculus 0 281
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 0 274
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 0 274
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 0 265
ENSMUST00000113667 H2-M5-004 protein_coding Mus_musculus 0 259
ENSMUST00000171139 H2-M2-002 protein_coding Mus_musculus 0 257
ENSMUST00000016427 H2-M2-001 protein_coding Mus_musculus 0 257
ENSMUST00000173096 Gm8835-001 unprocessed_pseudogene Mus_musculus 0 217
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 0 213
ENSMUST00000073546 H2-M10.3-001 protein_coding Mus_musculus 0 211
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 0 209
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 0 202
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 0 202
ENSMUST00000174378 Gm4256-001 unprocessed_pseudogene Mus_musculus 0 198
ENSMUST00000169950 H2-M10.4-201 protein_coding Mus_musculus 0 193
ENSMUST00000057502 H2-M10.4-001 protein_coding Mus_musculus 0 193
ENSMUST00000174444 Gm4271-001 unprocessed_pseudogene Mus_musculus 8.00141e-43 178
ENSMUST00000041964 H2-M11-001 protein_coding Mus_musculus 2e-38 163
ENSMUST00000174471 H2-T23-005 retained_intron Mus_musculus 0.00000000000002 84

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