C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HLA complex group 4 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429656 HCG4P5-001 ENSG00000227766 9606 - 6:29942075-29943067 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000429656
Transcript ID Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000429656 122.976±0.00 9.925±0.00 15.951±0.00 23.108±0.00 33.336±0.00 303.316±0.00 120.897±21.88 16.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0002 CGP 6:29826967-29945884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 248
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 231
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 231
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 231
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 230
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 224
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 220
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 0 220
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 0 220
ENSMUST00000116598 H2-Q7-203 protein_coding Mus_musculus 0 220
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 0 220
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 0 220
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 220
ENSMUST00000174854 H2-Q5-002 retained_intron Mus_musculus 0 220
ENSMUST00000174471 H2-T23-005 retained_intron Mus_musculus 0 215
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 209
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 209
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 0 202
ENSMUST00000174094 Gm10499-002 transcribed_unprocessed_pseudogene Mus_musculus 1.4013e-45 187

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