C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal modification protein rimK-like family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431473 RIMKLA-001 ENSG00000177181 9606 + 1:42380806-42422578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000431473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000431473 0.191±0.00 0.097±0.00 0.243±0.00 2.613±1.48 0.147±0.11 0.655±0.05 1.481±1.05 0.335±0.28 0.127±0.12 0.257±0.00 0.048±0.04 0.056±0.02 0.139±0.07 0.689±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B0 CIL_0005B0_0002 CGP 1:42380795-42456267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004363 IEA glutathione synthase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0006750 IEA glutathione biosynthetic process
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding
GO:0072590 ISS N-acetyl-L-aspartate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049994 Rimkla-001 protein_coding Mus_musculus 0 1500
ENSMUST00000126728 Rimkla-002 processed_transcript Mus_musculus 0 335
ENSMUST00000129150 Zmynd12-002 processed_transcript Mus_musculus 2.00386e-43 183

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