C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, W (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431711 HLA-W-001 ENSG00000234786 9606 + CHR_HSCHR6_MHC_SSTO_CTG1:29945879-29947844 unprocessed_pseudogene

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 233
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 0 211
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 0 211
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 0 211
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 207
ENSMUST00000173809 Gm8815-001 unprocessed_pseudogene Mus_musculus 0 207
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 204
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 200
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 200
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 200
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 200
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 200
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 193
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 193
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 193
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 193
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 193
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 8.00141e-43 178
ENSMUST00000174345 Gm17782-001 unprocessed_pseudogene Mus_musculus 3.00018e-42 176
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 4.00001e-41 172
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 1e-36 158
ENSMUST00000169950 H2-M10.4-201 protein_coding Mus_musculus 1e-31 141
ENSMUST00000057502 H2-M10.4-001 protein_coding Mus_musculus 1e-31 141
ENSMUST00000073546 H2-M10.3-001 protein_coding Mus_musculus 1e-31 141
ENSMUST00000173096 Gm8835-001 unprocessed_pseudogene Mus_musculus 4e-31 139
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 5e-30 135
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 5e-30 135
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 5e-30 135
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 2e-28 130

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