C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000432071 VAMP8-002 ENSG00000118640 9606 + 2:85561562-85581997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000432071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000432071 22.442±0.00 61.575±0.00 1.391±0.00 4.332±3.68 12.227±7.90 16.820±0.00 5.906±0.00 93.753±0.00 33.422±0.00 51.835±0.00 2.808±0.65 18.787±2.79 177.655±8.67 17.925±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0004ID CIL_0004ID_0002 CGP 2:85561562-85593412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142613 Vamp8-002 retained_intron Mus_musculus 0 333
ENSMUST00000059983 Vamp8-001 protein_coding Mus_musculus 0 331

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