C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433054 RP11-1O7.1-001 ENSG00000231735 9606 + 2:173297629-173298512 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryENST00000433054
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000433054 0.043±0.00 0.114±0.00 0.025±0.00 0.066±0.00 0.021±0.00 0.070±0.00 0.040±0.00 0.022±0.00 0.116±0.00 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JV CIL_0008JV_0001 VISTA 2:172949643-173551205
CIL_0004KE CIL_0004KE_0001 CGP 2:173075435-173368997
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 754
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 750
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 749
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 749
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 730
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 701
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 691
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 689
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 686
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 669
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 640
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 595
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 595
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 595
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000119217 Gm8302-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 529
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 514
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 494
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 494
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 494
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000120110 Gm13204-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 355
ENSMUST00000120471 Gm11888-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000187136 RP23-258M15.4-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 278
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 1e-26 124
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 7e-19 99

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