C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 21 (autosomal recessive, Mast syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433215 SPG21-005 ENSG00000090487 9606 - 15:64963027-64989474 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000433215
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000433215 3.723±0.22 1.621±0.00 4.081±0.00 1.087±0.00 4.531±0.45 3.171±0.00 5.236±0.00 14.119±6.43 14.980±2.29 9.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080
CIL_0004WJ CIL_0004WJ_0002 CGP 15:64911902-64990310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0030140 IDA trans-Golgi network transport vesicle
GO:0042609 IPI CD4 receptor binding
GO:0050851 IC antigen receptor-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034955 Spg21-201 protein_coding Mus_musculus 0 1107

Loading