C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 110
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433345 RPL21P110-001 ENSG00000226617 9606 + 13:72703693-72704138 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryENST00000433345
Transcript ID Kidney Ovary
ENST00000433345 0.031±0.00 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PD CIL_0004PD_0002 CGP 13:71437966-72727687
CIL_0009CE CIL_0009CE_0001 VISTA 13:72126945-72728915
CIL_00095A CIL_00095A_0001 VISTA 13:72132003-72732838
CIL_00095B CIL_00095B_0001 VISTA 13:72193463-72794242
CIL_000955 CIL_000955_0001 VISTA 13:72204429-72805745
CIL_0009CH CIL_0009CH_0001 VISTA 13:72207309-72809616
CIL_0009CG CIL_0009CG_0001 VISTA 13:72212874-72814683
CIL_000956 CIL_000956_0001 VISTA 13:72274916-72875890
CIL_0009CJ CIL_0009CJ_0001 VISTA 13:72350262-72951768

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 311
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 311
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 311
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 294
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 289
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 283
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 283
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 267
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 267
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 261
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 261
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 261
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 255
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 235
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 198
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 187
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 1.99965e-42 176
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 2e-37 159
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 6e-37 158
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 6e-37 158
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 3e-30 135
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 1e-18 97

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