C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434232 NPM1P18-001 ENSG00000225739 9606 + 7:36818959-36819690 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungMuscleOvaryTestisENST00000434232
Transcript ID Adipose Adrenal Brain Breast Colon Lung Muscle Ovary Testis
ENST00000434232 0.015±0.00 0.049±0.00 0.016±0.00 0.016±0.00 0.570±0.00 0.414±0.00 0.071±0.00 0.041±0.00 0.014±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 773
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 699
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 527
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 527
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 527
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 527
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 291
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 6e-24 115

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