C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MMS19 nucleotide excision repair homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434538 MMS19-020 ENSG00000155229 9606 - 10:97458324-97467525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000434538
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000434538 4.048±0.00 3.338±0.00 3.036±0.00 3.548±0.00 2.476±0.00 3.405±2.72 3.046±0.00 4.884±0.00 9.300±0.00 5.608±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y1 CIL_0005Y1_0001 CGP 10:97446131-97498794
CIL_0004VE CIL_0004VE_0001 CGP 10:97458324-97571209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166090 Mms19-012 nonsense_mediated_decay Mus_musculus 0 2032
ENSMUST00000026168 Mms19-009 protein_coding Mus_musculus 0 1967
ENSMUST00000164776 Mms19-004 nonsense_mediated_decay Mus_musculus 0 1967
ENSMUST00000163287 Mms19-011 protein_coding Mus_musculus 0 1967
ENSMUST00000171561 Mms19-001 protein_coding Mus_musculus 0 1967
ENSMUST00000163398 Mms19-010 nonsense_mediated_decay Mus_musculus 0 1953
ENSMUST00000170209 Mms19-007 retained_intron Mus_musculus 0 1953
ENSMUST00000171755 Mms19-002 retained_intron Mus_musculus 0 1585
ENSMUST00000169775 Mms19-003 nonsense_mediated_decay Mus_musculus 0 1232
ENSMUST00000167927 Mms19-006 nonsense_mediated_decay Mus_musculus 0 1066
ENSMUST00000167820 Mms19-015 protein_coding Mus_musculus 0 752
ENSMUST00000168484 Mms19-005 nonsense_mediated_decay Mus_musculus 0 547

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