C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434555 B4GALT2-002 ENSG00000117411 9606 + 1:43979436-43991168 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000434555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000434555 20.386±0.00 5.209±0.00 0.298±0.00 9.059±5.12 8.600±5.69 16.811±0.00 1.506±1.09 4.424±2.80 4.402±2.92 8.254±0.00 5.472±4.29 9.538±6.39 7.950±3.59 16.035±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003831 IEA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0003945 IEA N-acetyllactosamine synthase activity
GO:0004461 IEA lactose synthase activity
GO:0005975 TAS carbohydrate metabolic process
GO:0008378 TAS galactosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0018146 TAS keratan sulfate biosynthetic process
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030266 B4galt2-001 protein_coding Mus_musculus 0 1555
ENSMUST00000084325 B4galt2-004 nonsense_mediated_decay Mus_musculus 0 1555
ENSMUST00000106421 B4galt2-007 protein_coding Mus_musculus 0 1395
ENSMUST00000167443 B4galt2-005 nonsense_mediated_decay Mus_musculus 0 1295
ENSMUST00000153358 B4galt2-006 protein_coding Mus_musculus 0 420
ENSMUST00000171548 B4galt2-003 protein_coding Mus_musculus 0 363
ENSMUST00000129985 B4galt3-004 retained_intron Mus_musculus 6e-23 113
ENSMUST00000126699 B4galt3-003 processed_transcript Mus_musculus 6e-23 113
ENSMUST00000111313 B4galt3-001 protein_coding Mus_musculus 6e-23 113
ENSMUST00000064272 B4galt3-002 protein_coding Mus_musculus 6e-23 113
ENSMUST00000132890 B4galt3-005 retained_intron Mus_musculus 0.000000000007 77

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