C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SON DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436227 SON-007 ENSG00000159140 9606 + 21:33552248-33577481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000436227
Transcript ID Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000436227 6.622±0.00 17.924±0.00 10.568±0.00 15.925±9.64 6.627±0.62 13.477±3.30 8.699±3.47 19.897±3.89 18.796±10.79 30.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0001 CGP 21:33485530-33543491
CIL_000466 CIL_000466_0001 CGP 21:33503931-33577481
CIL_00037O CIL_00037O_0001 CGP 21:33542618-33588708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117633 Son-001 protein_coding Mus_musculus 0 4780
ENSMUST00000114037 Son-013 protein_coding Mus_musculus 0 3374
ENSMUST00000140312 Son-005 nonsense_mediated_decay Mus_musculus 0 2815
ENSMUST00000119368 Son-003 protein_coding Mus_musculus 0 2525
ENSMUST00000114036 Son-002 protein_coding Mus_musculus 0 2015
ENSMUST00000147891 Son-004 nonsense_mediated_decay Mus_musculus 0 1705
ENSMUST00000122302 Son-012 protein_coding Mus_musculus 0 1631
ENSMUST00000146079 Son-010 processed_transcript Mus_musculus 0 1099
ENSMUST00000133589 Son-009 processed_transcript Mus_musculus 0 763
ENSMUST00000145235 Son-007 processed_transcript Mus_musculus 0 547
ENSMUST00000147461 Son-006 processed_transcript Mus_musculus 0 383
ENSMUST00000151503 Son-011 retained_intron Mus_musculus 0 294
ENSMUST00000133942 Donson-007 protein_coding Mus_musculus 7e-21 108

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