C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vinculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436396 VCL-002 ENSG00000035403 9606 + 10:74083476-74120160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000436396
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000436396 11.619±0.00 19.322±0.00 2.619±0.00 10.983±0.00 26.804±0.00 19.428±0.00 14.425±0.00 3.914±0.00 24.698±0.00 6.468±0.00 8.125±0.02 13.618±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0001 CGP 10:73995193-74151063

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022369 Vcl-201 protein_coding Mus_musculus 0 2305
ENSDART00000039828 vcla-201 protein_coding Danio_rerio 0 1245
ENSDART00000124167 vcla-001 protein_coding Danio_rerio 0 1243
ENSDART00000110304 vcla-202 protein_coding Danio_rerio 0 508
ENSMUST00000154460 Ap3m1-001 protein_coding Mus_musculus 0 285
ENSMUST00000122974 Ap3m1-008 processed_transcript Mus_musculus 0 254
ENSMUST00000131469 Ap3m1-009 processed_transcript Mus_musculus 0 252

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