C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: histone deacetylase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436675 HDAC8-017 ENSG00000147099 9606 - X:72462011-72572858 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000436675
Transcript ID Muscle
ENST00000436675 0.893±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RM CIL_0006RM_0001 CGP X:72301638-72573103
CIL_0006RW CIL_0006RW_0001 CGP X:72329516-72714319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004407 IEA histone deacetylase activity
GO:0016575 IEA histone deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137785 Hdac8-002 processed_transcript Mus_musculus 0 771
ENSMUST00000087916 Hdac8-001 protein_coding Mus_musculus 0 771
ENSMUST00000148481 Hdac8-003 processed_transcript Mus_musculus 0 760
ENSMUST00000154872 Hdac8-004 nonsense_mediated_decay Mus_musculus 0 405
ENSMUST00000154024 Hdac8-005 retained_intron Mus_musculus 0 398

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