C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437246 AC005884.1-001 ENSG00000227694 9606 + 17:61069871-61070341 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000437246
Transcript ID Kidney
ENST00000437246 3.490±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0002 CGP 17:60600183-61392838
CIL_000703 CIL_000703_0001 CGP 17:60677453-61409466
CIL_0007RJ CIL_0007RJ_0001 VISTA 17:60951116-61552834

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 588
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 582
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 569
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 545
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 414
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 0 357
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 6e-32 141

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