C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437413 SMG1P3-006 ENSG00000180747 9606 - 16:21479545-21520179 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000437413
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000437413 6.048±0.00 6.099±0.00 5.906±0.00 9.259±0.00 2.987±0.00 8.665±0.00 6.251±0.00 7.497±0.00 5.970±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045557 Slc7a5-001 protein_coding Mus_musculus 0 479
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 305
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 270
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 252
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 252
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 252

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