C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, N (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437516 HLA-N-001 ENSG00000224372 9606 + 6:30351416-30351550 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 7e-21 102
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 7e-21 102
ENSMUST00000174325 H2-D1-005 retained_intron Mus_musculus 7e-21 102
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 7e-21 102
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 7e-21 102
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000046131 Gm7030-201 protein_coding Mus_musculus 7e-21 102
ENSMUST00000172968 Gm7030-202 protein_coding Mus_musculus 7e-21 102
ENSMUST00000173322 Gm7030-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 7e-21 102
ENSMUST00000173317 H2-K1-009 retained_intron Mus_musculus 7e-21 102
ENSMUST00000087189 H2-K1-005 protein_coding Mus_musculus 7e-21 102
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 7e-21 102
ENSMUST00000173602 H2-K1-004 retained_intron Mus_musculus 7e-21 102
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 7e-21 102
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 7e-21 102
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 9e-20 99
ENSMUST00000173809 Gm8815-001 unprocessed_pseudogene Mus_musculus 3e-19 97
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 3e-19 97
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 3e-19 97
ENSMUST00000173016 H2-Q7-002 retained_intron Mus_musculus 3e-19 97
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 3e-19 97
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 3e-19 97
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 3e-19 97
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 3e-19 97
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 3e-19 97
ENSMUST00000185167 H2-Bl-002 nonsense_mediated_decay Mus_musculus 3e-19 97
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 3e-19 97
ENSMUST00000184850 H2-Bl-006 retained_intron Mus_musculus 3e-19 97
ENSMUST00000173975 H2-Q4-002 retained_intron Mus_musculus 1e-18 95
ENSMUST00000081435 H2-Q4-001 protein_coding Mus_musculus 1e-18 95
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 2e-17 92
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 2e-17 92
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 5e-17 90
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 7e-16 86
ENSMUST00000174378 Gm4256-001 unprocessed_pseudogene Mus_musculus 0.000000000002 75
ENSMUST00000113667 H2-M5-004 protein_coding Mus_musculus 0.0000000003 68
ENSMUST00000176712 H2-M5-002 protein_coding Mus_musculus 0.0000000003 68
ENSMUST00000176784 H2-M5-005 protein_coding Mus_musculus 0.0000000003 68
ENSMUST00000169189 H2-M5-001 protein_coding Mus_musculus 0.0000000003 68
ENSMUST00000145260 H2-M5-003 retained_intron Mus_musculus 0.0000000003 68
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 0.000000003 64
ENSMUST00000173096 Gm8835-001 unprocessed_pseudogene Mus_musculus 0.00000001 62
ENSMUST00000174444 Gm4271-001 unprocessed_pseudogene Mus_musculus 0.00000001 62

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