C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438081 SKP1P1-001 ENSG00000231234 9606 - 7:66423405-66423893 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438081
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438081 0.260±0.00 0.202±0.00 0.226±0.12 0.167±0.09 0.074±0.00 0.157±0.03 0.387±0.08 0.344±0.28 0.024±0.00 0.090±0.00 0.820±0.48 0.181±0.01 2.026±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024I CIL_00024I_0001 CGP 7:66205199-66811187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 678
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 678
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 455
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 0 204
ENSMUST00000093121 Skp1a-003 retained_intron Mus_musculus 4e-29 132

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