C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, W (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439514 HLA-W-001 ENSG00000235290 9606 + 6:29956596-29958570 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000439514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000439514 0.244±0.00 0.291±0.00 0.763±0.00 0.060±0.00 0.229±0.00 0.322±0.30 0.148±0.00 0.192±0.00 0.049±0.00 0.456±0.11 0.046±0.00 0.091±0.00 0.342±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 226
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 219
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 0 215
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 0 215
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 0 215
ENSMUST00000173809 Gm8815-001 unprocessed_pseudogene Mus_musculus 0 211
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 209
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 209
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 209
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 209
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 209
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 209
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 196
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 196
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 196
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 196
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 196
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 1.96182e-44 183
ENSMUST00000174345 Gm17782-001 unprocessed_pseudogene Mus_musculus 6.02558e-44 182
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 4.00001e-41 172
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 4.00001e-41 172
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 2e-39 167
ENSMUST00000073546 H2-M10.3-001 protein_coding Mus_musculus 2e-33 147
ENSMUST00000173096 Gm8835-001 unprocessed_pseudogene Mus_musculus 8e-33 145
ENSMUST00000169950 H2-M10.4-201 protein_coding Mus_musculus 1e-31 141
ENSMUST00000057502 H2-M10.4-001 protein_coding Mus_musculus 1e-31 141
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 5e-30 135
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 5e-30 135
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 5e-30 135
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 2e-28 130

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