C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439602 RPS18-001 ENSG00000231500 9606 + 6:33272010-33276510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000439602
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000439602 1336.800±0.00 1437.060±0.00 46.347±0.00 190.657±70.54 713.866±409.57 932.362±638.11 190.068±108.23 350.307±147.46 335.263±74.00 887.854±690.35 676.588±506.01 2238.682±1602.10 1938.217±795.07 756.770±295.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005581 IEA collagen trimer
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 IBA cytosol
GO:0005840 NAS:IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:IBA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IBA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042254 IBA ribosome biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 802
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 691
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 651
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 628
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 604
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 529
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 527
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 494
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 483
ENSMUST00000174662 Rps18-003 retained_intron Mus_musculus 0 226

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