C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen and calcium binding EGF domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439986 CCBE1-001 ENSG00000183287 9606 - 18:59430940-59697380 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000439986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000439986 2.510±0.00 0.332±0.00 0.154±0.00 0.086±0.04 0.299±0.07 2.353±1.79 0.105±0.00 0.343±0.26 0.306±0.01 3.034±1.66 0.232±0.00 4.717±2.52 0.230±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0001 CGP 18:59327823-59697380
CIL_0007FI CIL_0007FI_0001 CGP 18:59430940-59904306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001946 ISS lymphangiogenesis
GO:0002020 IPI protease binding
GO:0002040 ISS sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0010575 IDA positive regulation vascular endothelial growth factor production
GO:0010595 IEA positive regulation of endothelial cell migration
GO:0010954 IDA positive regulation of protein processing
GO:0031012 IDA extracellular matrix
GO:0045766 IEA positive regulation of angiogenesis
GO:0048845 ISS venous blood vessel morphogenesis
GO:1900748 IDA positive regulation of vascular endothelial growth factor signaling pathway
GO:1901492 IEA positive regulation of lymphangiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130300 Ccbe1-001 protein_coding Mus_musculus 0 1410
ENSMUST00000061103 Ccbe1-005 nonsense_mediated_decay Mus_musculus 0 1404
ENSMUST00000146610 Ccbe1-003 processed_transcript Mus_musculus 0 976
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00003 57

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