C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440547 HNRNPA1P39-001 ENSG00000237804 9606 - 2:174310015-174310974 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalKidneyLungMusclePlacentaTestisENST00000440547
Transcript ID Adipose Adrenal Kidney Lung Muscle Placenta Testis
ENST00000440547 0.015±0.00 0.047±0.00 0.016±0.00 0.016±0.00 0.041±0.00 0.019±0.00 0.046±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0004JE CIL_0004JE_0001 CGP 2:174072447-174338492

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1153
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1153
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1101
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1064
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1062
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1037
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 889
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 881
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 876
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 876
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 743
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 4e-32 143

Loading