C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440571 CNOT3-009 ENSG00000088038 9606 + 19:54143730-54148697 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLungMuscleENST00000440571
Transcript ID Adipose Brain Lung Muscle
ENST00000440571 5.660±0.00 4.785±0.00 10.237±0.00 2.459±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681
CIL_0001U4 CIL_0001U4_0001 CGP 19:54137728-54159882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038913 Cnot3-002 protein_coding Mus_musculus 0 1417
ENSMUST00000143085 Cnot3-001 retained_intron Mus_musculus 0 1341
ENSMUST00000132344 Cnot3-006 protein_coding Mus_musculus 0 1277
ENSMUST00000135977 Cnot3-003 nonsense_mediated_decay Mus_musculus 0 1079
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 0 287
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 0 265

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