C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440938 AC073465.3-001 ENSG00000226131 9606 - 2:173485865-173486362 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyENST00000440938
Transcript ID Adipose Adrenal Brain Breast Heart Kidney
ENST00000440938 0.029±0.00 0.090±0.00 0.063±0.00 0.030±0.00 0.027±0.00 0.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JV CIL_0008JV_0001 VISTA 2:172949643-173551205
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0004JD CIL_0004JD_0001 CGP 2:173354820-173965702

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 612
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 593
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 592
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 588
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 558
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 549
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 505
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 5.00264e-43 178
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 3e-30 135

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