C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441222 USP46-001 ENSG00000109189 9606 - 4:52590972-52659335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000441222
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000441222 0.378±0.00 0.131±0.00 1.302±0.12 0.424±0.00 0.464±0.00 0.095±0.00 0.111±0.02 0.240±0.00 0.601±0.09 0.277±0.01 0.577±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CQ CIL_0001CQ_0001 CGP 4:52051331-52659335

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001662 IEA behavioral fear response
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008343 IEA adult feeding behavior
GO:0016579 IDA protein deubiquitination
GO:0032228 ISS regulation of synaptic transmission, GABAergic
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0048149 IEA behavioral response to ethanol
GO:0060013 IEA righting reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068058 Usp46-001 protein_coding Mus_musculus 0 2052
ENSMUST00000119154 Usp46-002 protein_coding Mus_musculus 0 1700
ENSMUST00000128750 Usp46-003 processed_transcript Mus_musculus 0 1482
ENSDART00000132093 usp46-001 protein_coding Danio_rerio 0 787
ENSMUST00000145016 Usp46-004 protein_coding Mus_musculus 0 544
ENSMUST00000150009 Usp46-005 retained_intron Mus_musculus 0 483
ENSMUST00000152408 Usp46-006 processed_transcript Mus_musculus 0 313

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