C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441246 POLR2B-006 ENSG00000047315 9606 + 4:56978869-57031007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverMuscleENST00000441246
Transcript ID Adipose Brain Breast Heart Liver Muscle
ENST00000441246 12.665±0.00 17.999±0.00 14.781±0.00 19.147±0.00 7.920±0.00 17.595±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0003EC CIL_0003EC_0002 CGP 4:56907876-56978823
CIL_0003E8 CIL_0003E8_0002 CGP 4:56963370-57031168
CIL_0001WP CIL_0001WP_0001 CGP 4:56977722-57110385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0032549 IEA ribonucleoside binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031167 Polr2b-001 protein_coding Mus_musculus 0 4614
ENSMUST00000132134 Polr2b-003 retained_intron Mus_musculus 0 475
ENSMUST00000150191 Polr2b-004 retained_intron Mus_musculus 0 425

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