C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 39B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441402 TMEM39B-003 ENSG00000121775 9606 + 1:32072943-32102866 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000441402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000441402 5.357±0.00 8.118±0.00 0.203±0.00 2.516±0.00 1.896±1.65 1.714±0.85 0.116±0.00 2.107±0.00 0.596±0.00 4.020±0.00 2.491±0.00 6.312±0.46 3.200±0.59 6.327±3.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102588 Tmem39b-001 protein_coding Mus_musculus 0 1295
ENSMUST00000125445 Tmem39b-002 nonsense_mediated_decay Mus_musculus 0 1295
ENSMUST00000154747 Tmem39b-004 retained_intron Mus_musculus 0 473
ENSMUST00000147668 Tmem39b-005 nonsense_mediated_decay Mus_musculus 0 470
ENSMUST00000137640 Tmem39b-003 protein_coding Mus_musculus 0 427

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