C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441433 RPL7AP38-001 ENSG00000213787 9606 + 7:26922110-26922912 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000441433
Transcript ID Testis
ENST00000441433 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JP CIL_0008JP_0001 VISTA 7:26366881-26968405
CIL_0008V2 CIL_0008V2_0001 VISTA 7:26389078-26990183
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0003PD CIL_0003PD_0001 CGP 7:26667062-27095996
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 662
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 656
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 640
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 634
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 606
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 599
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 599
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 542
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 508
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 470
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 403
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 403
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000129972 Gm16304-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 346
ENSMUST00000119253 Gm13975-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 8e-28 128
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 2e-18 97
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.00000000000007 82
ENSMUST00000118404 Gm12713-001 processed_pseudogene Mus_musculus 0.00000008 62

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