C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441799 HMGB3P9-001 ENSG00000229992 9606 - 1:92647048-92647630 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000441799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000441799 0.084±0.00 0.088±0.00 1.155±0.00 0.330±0.18 0.335±0.14 0.998±0.00 0.180±0.00 0.473±0.00 1.854±0.00 0.642±0.45 0.113±0.10 0.570±0.50 0.296±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007C9 CIL_0007C9_0002 CGP 1:92474762-92792404
CIL_0007CC CIL_0007CC_0002 CGP 1:92508696-92841924

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 486
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 486
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 486
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 486
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 486
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 460
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 374
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 337
ENSDART00000128242 hmgb3b-002 protein_coding Danio_rerio 0.00000000000001 84
ENSDART00000024750 hmgb3b-001 protein_coding Danio_rerio 0.00000000000001 84

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