C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442013 TARDBPP1-001 ENSG00000233402 9606 - 20:6200989-6202191 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000442013
Transcript ID Brain
ENST00000442013 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J1 CIL_0001J1_0001 CGP 20:6074845-6780280

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 702
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 279
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 279
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 279
ENSMUST00000185673 Tardbp-014 protein_coding Mus_musculus 0 279
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 0 279
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 279
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 0 279
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 279
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 279
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 279
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 279
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 279
ENSMUST00000190478 Tardbp-013 retained_intron Mus_musculus 0 244

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